Because Kojima just wanted to fuck with us. I think he is the last person to take this crazy story seriously, he knows he is doing a GAME. The game is talking to the player thru Kojima. “You are Big Boss, Big Boss is you... now go out and have a life. Like I do”
Neo-Dio
dio-neo1
Probably because the same person involved in writing the parasitic breathes through skin thing is responsible for the ending.
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